proteome science سال:2012 - دوره:10

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proteome science
سال:2012 - دوره:10 - شماره:Suppl.1

A framework for personalized medicine: Prediction of drug sensitivity in cancer by proteomic profiling Accuracy improvement in protein complex prediction from protein interaction networks by refining cluster overlaps An unsupervised machine learning method for assessing quality of tandem mass spectra Computational synchronization of microarray data with application to Plasmodium falciparum Epigenetic functions enriched in transcription factors binding to mouse recombination hotspots Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surface Filtering Gene Ontology semantic similarity for identifying protein complexes in large protein interaction networks High performance transcription factor-DNA docking with GPU computing IDDI: Integrated domain-domain interaction and protein interaction analysis system Identifying transcription factors and microRNAs as key regulators of pathways using Bayesian inference on known pathway structures In-silico identification of phenotype-biased functional modules Intrinsic disorder in putative protein sequences Ion annotation-assisted analysis of LC-MS based metabolomic experiment Modeling regionalized volumetric differences in protein-ligand binding cavities Predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using short polypeptide clusters Prediction of heme binding residues from protein sequences with integrative sequence profiles Protein sequence classification using feature hashing Protein surface representation and analysis by dimension reduction Seed selection strategy in global network alignment without destroying the entire structures of functional modules Using multitask classification methods to investigate the kinase-specific phosphorylation sites