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Identifiers for the 21st century: How to design,provision,and reuse persistent identifiers to maximize utility and impact of life science data
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نویسنده
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mcmurry j.a. ,juty n. ,blomberg n. ,burdett t. ,conlin t. ,conte n. ,courtot m. ,deck j. ,dumontier m. ,fellows d.k. ,gonzalez-beltran a. ,gormanns p. ,grethe j. ,hastings j. ,hériché j.-k. ,hermjakob h. ,ison j.c. ,jimenez r.c. ,jupp s. ,kunze j. ,laibe c. ,le novère n. ,malone j. ,martin m.j. ,mcentyre j.r. ,morris c. ,muilu j. ,müller w. ,rocca-serra p. ,sansone s.-a. ,sariyar m. ,snoep j.l. ,soiland-reyes s. ,stanford n.j. ,swainston n. ,washington n. ,williams a.r. ,wimalaratne s.m. ,winfree l.m. ,wolstencroft k. ,goble c. ,mungall c.j. ,haendel m.a. ,parkinson h.
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منبع
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plos biology - 2017 - دوره : 15 - شماره : 6
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چکیده
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In many disciplines,data are highly decentralized across thousands of online databases (repositories,registries,and knowledgebases). wringing value from such databases depends on the discipline of data science and on the humble bricks and mortar that make integration possible; identifiers are a core component of this integration infrastructure. drawing on our experience and on work by other groups,we outline 10 lessons we have learned about the identifier qualities and best practices that facilitate large-scale data integration. specifically,we propose actions that identifier practitioners (database providers) should take in the design,provision and reuse of identifiers. we also outline the important considerations for those referencing identifiers in various circumstances,including by authors and data generators. while the importance and relevance of each lesson will vary by context,there is a need for increased awareness about how to avoid and manage common identifier problems,especially those related to persistence and web-accessibility/resolvability. we focus strongly on web-based identifiers in the life sciences; however,the principles are broadly relevant to other disciplines. © 2017 mcmurry et al.
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آدرس
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department of medical informatics and epidemiology and ohsu library,oregon health & science university,portland,or, United States, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, elixir hub,wellcome genome campus,hinxton,cambridge, United Kingdom, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, department of medical informatics and epidemiology and ohsu library,oregon health & science university,portland,or, United States, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, berkeley natural history museums,university of california at berkeley,berkely,ca, United States, institute of data science,maastricht university,maastricht, Netherlands, school of computer science,the university of manchester,manchester, United Kingdom, oxford e-research centre,university of oxford,oxford, United Kingdom, institute of experimental genetics,helmholtz centre munich,german research center for environmental health,neuherberg, Germany, center for research in biological systems,university of california san diego,la jolla,ca, United States, babraham institute,cambridge, United Kingdom, european molecular biology laboratory,heidelberg, Germany, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, center for biological sequence analysis,department of systems biology,technical university of denmark,lyngby, Denmark, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, california digital library,oakland,ca, United States, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, babraham institute,cambridge, United Kingdom, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, science and technology facilities council,daresbury laboratory,warrington, United Kingdom, genomics coordination center,department of genetics,university medical center groningen and groningen bioinformatics center,university of groningen,groningen, Netherlands, scientific databases and visualization at heidelberg institute for theoretical studies,heidelberg, Germany, oxford e-research centre,university of oxford,oxford, United Kingdom, oxford e-research centre,university of oxford,oxford, United Kingdom, institute for medical informatics,bern university of applied sciences engineering and information technology,bern, Switzerland, manchester institute of biology,university of manchester,manchester,united kingdom,department of biochemistry,stellenbosch university,stellenbosch, South Africa, school of computer science,the university of manchester,manchester, United Kingdom, school of computer science,the university of manchester,manchester, United Kingdom, manchester centre for synthetic biology of fine and speciality chemicals,university of manchester,manchester, United Kingdom, environmental genomics and systems biology,lawrence berkeley national laboratory,berkeley,ca, United States, school of computer science,the university of manchester,manchester, United Kingdom, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom, department of medical informatics and epidemiology and ohsu library,oregon health & science university,portland,or, United States, leiden institute of advanced computer science,leiden university,leiden, Netherlands, school of computer science,the university of manchester,manchester, United Kingdom, environmental genomics and systems biology,lawrence berkeley national laboratory,berkeley,ca, United States, department of medical informatics and epidemiology and ohsu library,oregon health & science university,portland,or, United States, european bioinformatics institute,european molecular biology laboratory,wellcome genome campus,hinxton,cambridge, United Kingdom
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