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The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples
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نویسنده
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deck j. ,gaither m.r. ,ewing r. ,bird c.e. ,davies n. ,meyer c. ,riginos c. ,toonen r.j. ,crandall e.d.
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منبع
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plos biology - 2017 - دوره : 15 - شماره : 8
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چکیده
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The genomic observatories metadatabase (geome,http://www.geome-db.org/) is an open access repository for geographic and ecological metadata associated with biosamples and genetic data. whereas public databases have served as vital repositories for nucleotide sequences,they do not accession all the metadata required for ecological or evolutionary analyses. geome fills this need,providing a user-friendly,web-based interface for both data contributors and data recipients. the interface allows data contributors to create a customized yet standard-compliant spreadsheet that captures the temporal and geospatial context of each biosample. these metadata are then validated and permanently linked to archived genetic data stored in the national center for biotechnology information’s (ncbi’s) sequence read archive (sra) via unique persistent identifiers. by linking ecologically and evolutionarily relevant metadata with publicly archived sequence data in a structured manner,geome sets a gold standard for data management in biodiversity science. © 2017 public library of science. all rights reserved.
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آدرس
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berkeley natural history museums,university of california,berkeley,ca, United States, hawaii institute of marine biology,university of hawaii,kaneohe,hi, United States, biocode,llc,junction city,or, United States, hawaii institute of marine biology,university of hawaii,kaneohe,hi,united states,texas a&m university,corpus christi,tx, United States, gump south pacific research station,university of california,moorea,french polynesia,berkeley institute for data science,university of california,berkeley,ca, United States, national museum of natural history,smithsonian institution,washington,dc, United States, university of queensland,st lucia,qld, Australia, hawaii institute of marine biology,university of hawaii,kaneohe,hi, United States, school of natural sciences,california state university,monterey bay,marina,ca, United States
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Authors
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