Computational identification of 18 microRNAs and their targets in three species of rose

Micrornas (mirnas) are non-protein coding,small endogenous rnas. their length ranges from 18-26 nucleotides (nt). the mirnas convergence property becomes a rational approach for the hunt of novel mirnas in other organisms by homology search. as presently very little mirnas are reported for rose species,so this study deals with the identification of mirnas in different species of rose. consequently 18 mirna belonging to 17 mirna families were identified in 3 species of rose (rosa hybrid,rosa chinensis and rosa virginiana). all of the identified mirna families (mir156,160,164,166,398,482,831,837,838,841,847,3436,3627,6135,6285,6287 and 6288) are being reported for the first time in rose. precursors of the identified mirnas form stable minimum free energy (mfe) stem-loop structures and the mature mirnas are found in the stem portions of their corresponding precursors. 11 putative targets of the mirnas have also been identified. the identified targets are various proteins including transcription factors. identification of 18 mirnas will be supportive to explore the gene regulation phenomenon in various species of roses and it will be a good contribution for understanding the post transcriptional gene regulation in various stages of the life cycles of roses. © 2015,pakistan botanical society. all rights reserved.