PPARG: Gene expression regulation and next-generation sequencing for unsolved issues

Peroxisome proliferator-activated receptor gamma (ppar ) is one of the most extensively studied ligand-inducible transcription factors (tfs),able to modulate its transcriptional activity through conformational changes. it is of particular interest because of its pleiotropic functions: it plays a crucial role in the expression of key genes involved in adipogenesis,lipid and glucid metabolism,atherosclerosis,inflammation,and cancer. its protein isoforms,the wide number of ppar target genes,ligands,and coregulators contribute to determine the complexity of its function. in addition,the presence of genetic variants is likely to affect expression levels of target genes although the impact of pparg gene variations on the expression of target genes is not fully understood. the introduction of massively parallel sequencing platformsin the next generation sequencing (ngs) erahas revolutionized the way of investigating the genetic causes of inherited diseases. in this context,dna-seq for identifyingwithin both coding and regulatory regions of pparg genenovel nucleotide variations and haplotypes associated to human diseases,chip-seq for defining a ppar binding map,and rna-seq for unraveling the wide and intricate gene pathways regulated by pparg,represent incredible steps toward the understanding of ppar in health and disease. copyright 2010 valerio costa et al.